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Structure and functional impact of seed region variant in MIR-499 gene family in bronchial asthma.

Structure and functional impact of seed region variant in MIR-499 gene family in bronchial asthma.
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Toraih EA, Hussein MH, Al Ageeli E, Riad E, AbdAllah NB, Helal GM, Fawzy MS,


Toraih EA, Hussein MH, Al Ageeli E, Riad E, AbdAllah NB, Helal GM, Fawzy MS, (click to view)

Toraih EA, Hussein MH, Al Ageeli E, Riad E, AbdAllah NB, Helal GM, Fawzy MS,

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Respiratory research 2017 09 0818(1) 169 doi 10.1186/s12931-017-0648-0
Abstract
BACKGROUND
Small non-coding RNAs (microRNAs) have been evolved to master numerous cellular processes. Genetic variants within microRNA seed region might influence microRNA biogenesis and function. The study aimed at determining the role of microRNA-499 (MIR-499) gene family polymorphism as a marker for susceptibility and progression of bronchial asthma and to analyze the structural and functional impact of rs3746444 within the seed region.

METHODS
Genotyping for 192 participants (96 patients and 96 controls) in the discovery phase and 319 subjects (115 patients and 204 controls) in the replication phase was performed via Real Time-Polymerase Chain Reaction technology. Patients underwent the methacholine challenge test and biochemical analysis. Gene structural and functional analysis, target prediction, annotation clustering, and pathway enrichment analysis were executed. Predicted functional effect of rs37464443 SNP was analyzed.

RESULTS
miR-499 gene family is highly implicated in inflammation-related signaling pathways. Rs374644 (A > G) in MIR499A and MIR499B within the seed region could disrupt target genes and create new genes. The G variant was associated with high risk of developing asthma under all genetic association models (G versus A: OR = 3.27, 95% CI = 2.53-4.22; GG versus AA: OR = 9.52, 95% CI = 5.61-16.5; AG versus AA: OR = 2.13, 95% CI = 1.24-3.46; GG + AG versus AA: OR = 4.43, 95% CI = 2.88-6.82). GG genotype was associated with poor pre-bronchodilator FEV1 (p = 0.047) and the worst bronchodilator response after Salbutamol inhalation, represented in low peaked expiratory flow rate (p = 0.035).

CONCLUSIONS
miR-499 rs3746444 (A > G) polymorphism was associated with asthma susceptibility and bronchodilator response in Egyptian children and adolescents. Further functional analysis is warranted to develop more specific theranostic agents for selecting targeted therapy.

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